6YDP Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6YDP_001 | 1/AA/8:18 | No text annotation | geometric HL_4LFB_001 HL_73535.1 | |
| HL_6YDP_002 | 1/AA/56:61 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6YDP_003 | 1/AA/88:94 | No text annotation | ||
| HL_6YDP_004 | 1/AA/122:129 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6YDP_005 | 1/AA/147:153 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_6YDP_006 | 1/AA/160:165 | No text annotation | ||
| HL_6YDP_007 | 1/AA/198:203 | GNRA | geometric HL_4WF9_020 HL_34789.4 | |
| HL_6YDP_008 | 1/AA/248:253 | GNRA | geometric HL_1G1X_003 NA | |
| HL_6YDP_009 | 1/AA/342:351 | No text annotation | geometric HL_5J7L_015 NA | |
| HL_6YDP_010 | 1/AA/376:381 | GNRA | geometric HL_1G1X_005 NA | |
| HL_6YDP_011 | 1/AA/426:436 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_6YDP_012 | 1/AA/467:477 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_6YDP_013 | 1/AA/501:506 | Mini UNCG | geometric HL_6AAX_001 HL_12626.2 | |
| HL_6YDP_014 | 1/AA/568:577 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_6YDP_015 | 1/AA/598:605 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6YDP_016 | 1/AA/636:641 | Mini UNCG | geometric HL_5TBW_040 NA | |
| HL_6YDP_017 | 1/AA/664:670 | Pseudoknot geometry | geometric HL_4GXY_003 HL_97725.1 | |
| HL_6YDP_018 | 1/AA/728:734 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6YDP_019 | 1/AA/760:767 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_010 HL_13999.3 | |
| HL_6YDP_020 | 1/AA/800:810 | No text annotation | geometric HL_4LFB_030 HL_86432.1 | |
| HL_6YDP_021 | 1/AA/880:888 | No text annotation | geometric HL_6CF2_001 HL_92598.1 | |
| HL_6YDP_022 | 1/AA/941:946 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6YDP_023 | 1/AV/13:19 | tRNA D-loop | geometric HL_2AZX_004 NA | |
| HL_6YDP_024 | 1/AV/28:36 | tRNA anticodon loop | geometric HL_4TUE_034 NA | |
| HL_6YDP_026 | 1/BA/54:61 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_6YDP_027 | 1/BA/80:86 | No text annotation | geometric HL_5J7L_141 NA | |
| HL_6YDP_028 | 1/BA/121:126 | GNRA | geometric HL_4QK9_002 HL_34789.4 | |
| HL_6YDP_029 | 1/BA/167:175 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_6YDP_030 | 1/BA/183:192 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_6YDP_031 | 1/BA/220:225 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6YDP_068 | 1/BA/270:277 | No text annotation | ||
| HL_6YDP_033 | 1/BA/291:300 | No text annotation | geometric HL_7RQB_023 NA | |
| HL_6YDP_034 | 1/BA/326:332 | No text annotation | geometric HL_4V9F_025 HL_92935.1 | |
| HL_6YDP_035 | 1/BA/372:377 | No text annotation | geometric HL_5J7L_157 NA | |
| HL_6YDP_036 | 1/BA/401:410 | No text annotation | ||
| HL_6YDP_037 | 1/BA/442:449 | GNRA | geometric HL_4WF9_027 HL_34789.4 | |
| HL_6YDP_038 | 1/BA/462:469 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6YDP_039 | 1/BA/509:519 | No text annotation | geometric HL_1MMS_001 NA | |
| HL_6YDP_040 | 1/BA/536:543 | GNRA wlth tandem sheared | geometric HL_1MMS_002 NA | |
| HL_6YDP_041 | 1/BA/613:620 | No text annotation | geometric HL_5E6M_002 HL_10874.1 | |
| HL_6YDP_069 | 1/BA/654:657 | No text annotation | geometric HL_2UWM_002 HL_32346.6 | |
| HL_6YDP_043 | 1/BA/688:693 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6YDP_044 | 1/BA/731:734 | Mini UNCG | geometric HL_5F9R_002 NA | |
| HL_6YDP_045 | 1/BA/760:767 | No text annotation | geometric HL_4V9F_042 HL_28592.2 | |
| HL_6YDP_046 | 1/BA/829:839 | No text annotation | geometric HL_5J7L_178 NA | |
| HL_6YDP_047 | 1/BA/850:864 | No text annotation | ||
| HL_6YDP_048 | 1/BA/887:892 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_6YDP_049 | 1/BA/906:915 | No text annotation | ||
| HL_6YDP_050 | 1/BA/944:952 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_6YDP_051 | 1/BA/1022:1031 | No text annotation | geometric HL_4V9F_052 HL_78372.1 | |
| HL_6YDP_052 | 1/BA/1148:1156 | No text annotation | geometric HL_7A0S_052 HL_11974.2 | |
| HL_6YDP_053 | 1/BA/1164:1176 | No text annotation | ||
| HL_6YDP_054 | 1/BA/1187:1190 | No text annotation | geometric HL_5J7L_176 NA | |
| HL_6YDP_055 | 1/BA/1198:1205 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.2 | |
| HL_6YDP_056 | 1/BA/1238:1243 | No text annotation | ||
| HL_6YDP_057 | 1/BA/1294:1302 | No text annotation | geometric HL_4V9F_062 HL_52011.1 | |
| HL_6YDP_058 | 1/BA/1351:1358 | GNRA variation | geometric HL_5J7L_194 NA | |
| HL_6YDP_059 | 1/BA/1374:1380 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_6YDP_060 | 1/BA/1417:1422 | GNRA | geometric HL_7A0S_068 HL_34789.4 | |
| HL_6YDP_061 | 1/BA/1461:1466 | GNRA | geometric HL_2R8S_001 HL_34789.4 | |
| HL_6YDP_062 | 1/BA/1489:1495 | No text annotation | ||
| HL_6YDP_063 | 1/BA/1514:1532 | No text annotation | ||
| HL_6YDP_064 | 1/BA/1557:1565 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_6YDP_066 | 1/BB/32:40 | tRNA anticodon loop | homologous HL_6UFM_002 HL_81376.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6YDP_025 | No text annotation | ||
| HL_6YDP_032 | No text annotation | ||
| HL_6YDP_042 | No text annotation | ||
| HL_6YDP_065 | tRNA D-loop | ||
| HL_6YDP_067 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6YDP_001 | 1/AA/3:5, 1/AA/21:22 | No text annotation | ||
| IL_6YDP_002 | 1/AA/39:40, 1/AA/215:217 | Single bulged A | geometric IL_5J7L_002 NA | |
| IL_6YDP_003 | 1/AA/44:46, 1/AA/178:179 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_6YDP_004 | 1/AA/48:50, 1/AA/175:176 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_6YDP_005 | 1/AA/78:79, 1/AA/103:105 | Minor groove platform | geometric IL_5ML7_009 IL_34520.3 | |
| IL_6YDP_006 | 1/AA/81:85, 1/AA/97:101 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_6YDP_007 | 1/AA/110:115, 1/AA/135:142 | Kink-turn with non-sequential stacking | geometric IL_6CZR_123 NA | |
| IL_6YDP_008 | 1/AA/116:119, 1/AA/133:134 | Major groove platform; stack outside cWW | geometric IL_1NTA_003 IL_74641.2 | |
| IL_6YDP_105 | 1/AA/116:120, 1/AA/131:134 | No text annotation | ||
| IL_6YDP_009 | 1/AA/119:120, 1/AA/131:133 | No text annotation | ||
| IL_6YDP_010 | 1/AA/186:189, 1/AA/210:212 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_01003.3 | |
| IL_6YDP_011 | 1/AA/190:194, 1/AA/208:209 | C-loop | geometric IL_5J7L_018 NA | |
| IL_6YDP_012 | 1/AA/194:195, 1/AA/206:208 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6YDP_013 | 1/AA/226:228, 1/AA/269:271 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_6YDP_014 | 1/AA/230:239, 1/AA/264:267 | No text annotation | ||
| IL_6YDP_015 | 1/AA/241:247, 1/AA/254:262 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6YDP_016 | 1/AA/290:296, 1/AA/484:485 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_6YDP_017 | 1/AA/301:305, 1/AA/397:401 | UAA/GAN | geometric IL_4V9F_037 IL_08938.1 | |
| IL_6YDP_106 | 1/AA/306:321, 1/AA/389:396 | No text annotation | ||
| IL_6YDP_018 | 1/AA/327:334, 1/AA/360:367 | No text annotation | ||
| IL_6YDP_019 | 1/AA/339:341, 1/AA/352:355 | No text annotation | ||
| IL_6YDP_020 | 1/AA/373:375, 1/AA/382:383 | Other IL | geometric IL_3WBM_004 IL_18188.1 | |
| IL_6YDP_021 | 1/AA/414:418, 1/AA/444:445 | Left turn | geometric IL_5J7L_036 NA | |
| IL_6YDP_022 | 1/AA/419:423, 1/AA/439:443 | tSH-tHW-tHS | geometric IL_5J7L_037 NA | |
| IL_6YDP_023 | 1/AA/491:500, 1/AA/507:514 | 10x8 Sarcin-Ricin; G-bulge | geometric IL_6UFH_002 IL_22278.1 | |
| IL_6YDP_024 | 1/AA/526:527, 1/AA/837:839 | Single bulged A | geometric IL_5J7L_039 NA | |
| IL_6YDP_025 | 1/AA/529:531, 1/AA/834:835 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_6YDP_026 | 1/AA/537:541, 1/AA/824:828 | C-loop | geometric IL_8HNT_002 IL_63596.12 | |
| IL_6YDP_027 | 1/AA/559:560, 1/AA/710:712 | Minor groove platform | geometric IL_1U6B_007 IL_34520.3 | |
| IL_6YDP_107 | 1/AA/595:607, 1/AA/695:700 | No text annotation | ||
| IL_6YDP_028 | 1/AA/608:610, 1/AA/693:694 | Single bulged C | geometric IL_6ZDP_001 IL_05642.2 | |
| IL_6YDP_029 | 1/AA/612:616, 1/AA/689:691 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_6YDP_030 | 1/AA/617:618, 1/AA/684:688 | Minor groove platform | geometric IL_3RW6_003 IL_24264.1 | |
| IL_6YDP_031 | 1/AA/620:621, 1/AA/680:682 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_6YDP_032 | 1/AA/621:623, 1/AA/678:680 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_6YDP_033 | 1/AA/629:632, 1/AA/652:655 | Double sheared | geometric IL_1SAQ_002 NA | |
| IL_6YDP_034 | 1/AA/633:634, 1/AA/643:651 | No text annotation | geometric IL_8S95_001 IL_25652.1 | |
| IL_6YDP_035 | 1/AA/749:754, 1/AA/773:778 | No text annotation | ||
| IL_6YDP_036 | 1/AA/843:845, 1/AA/927:930 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_6YDP_037 | 1/AA/845:848, 1/AA/923:927 | No text annotation | geometric IL_8C3A_471 NA | |
| IL_6YDP_038 | 1/AA/849:851, 1/AA/920:922 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.3 | |
| IL_6YDP_039 | 1/AA/851:855, 1/AA/915:920 | No text annotation | ||
| IL_6YDP_040 | 1/AA/857:859, 1/AA/911:913 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_6YDP_041 | 1/AA/860:863, 1/AA/907:910 | Double sheared | geometric IL_4V88_468 NA | |
| IL_6YDP_044 | 1/AV/4:6, 1/AV/62:64 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_01003.3 | |
| IL_6YDP_045 | 1/BA/2:4, 1/BA/147:152 | No text annotation | ||
| IL_6YDP_046 | 1/BA/4:8, 1/BA/132:147 | No text annotation | ||
| IL_6YDP_047 | 1/BA/12:13, 1/BA/103:105 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_6YDP_048 | 1/BA/70:73, 1/BA/92:95 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_71194.2 | |
| IL_6YDP_049 | 1/BA/73:79, 1/BA/87:92 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5J7L_251 NA | |
| IL_6YDP_050 | 1/BA/181:183, 1/BA/192:194 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_71625.3 | |
| IL_6YDP_051 | 1/BA/214:216, 1/BA/230:232 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_01003.3 | |
| IL_6YDP_052 | 1/BA/216:219, 1/BA/226:230 | No text annotation | ||
| IL_6YDP_053 | 1/BA/240:242, 1/BA/353:355 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.3 | |
| IL_6YDP_054 | 1/BA/242:246, 1/BA/346:353 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6YDP_055 | 1/BA/249:251, 1/BA/341:343 | No text annotation | geometric IL_3LA5_001 NA | |
| IL_6YDP_056 | 1/BA/259:261, 1/BA/316:318 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_6YDP_057 | 1/BA/265:266, 1/BA/310:312 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_6YDP_058 | 1/BA/285:288, 1/BA/303:305 | Major groove platform with extra cWW | geometric IL_5TBW_031 NA | |
| IL_6YDP_059 | 1/BA/322:324, 1/BA/334:338 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6YDP_060 | 1/BA/394:400, 1/BA/411:417 | No text annotation | geometric IL_5XWG_002 IL_74768.1 | |
| IL_6YDP_061 | 1/BA/478:480, 1/BA/588:589 | Single bulged A | geometric IL_1NBS_005 IL_14190.2 | |
| IL_6YDP_062 | 1/BA/502:504, 1/BA/524:526 | Isolated non-canonical cWW pair | geometric IL_5J7L_273 NA | |
| IL_6YDP_063 | 1/BA/504:507, 1/BA/521:524 | No text annotation | geometric IL_5D8H_002 IL_28482.1 | |
| IL_6YDP_064 | 1/BA/531:534, 1/BA/545:546 | Major groove platform | geometric IL_4V9F_044 IL_48076.8 | |
| IL_6YDP_065 | 1/BA/640:647, 1/BA/1006:1012 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_289 NA | |
| IL_6YDP_066 | 1/BA/663:666, 1/BA/773:779 | No text annotation | ||
| IL_6YDP_067 | 1/BA/682:687, 1/BA/694:697 | C-loop | homologous IL_9DFE_050 IL_63596.12 | |
| IL_6YDP_068 | 1/BA/710:713, 1/BA/743:751 | No text annotation | ||
| IL_6YDP_069 | 1/BA/719:731, 1/BA/734:737 | No text annotation | ||
| IL_6YDP_070 | 1/BA/787:792, 1/BA/998:1000 | No text annotation | ||
| IL_6YDP_071 | 1/BA/798:800, 1/BA/990:992 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_6YDP_072 | 1/BA/801:804, 1/BA/988:989 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6YDP_108 | 1/BA/801:809, 1/BA/985:989 | No text annotation | geometric IL_4WF9_117 IL_80252.1 | |
| IL_6YDP_073 | 1/BA/804:809, 1/BA/985:988 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_6YDP_074 | 1/BA/809:817, 1/BA/982:985 | No text annotation | ||
| IL_6YDP_075 | 1/BA/822:823, 1/BA/975:977 | Single bulged A | geometric IL_7RQB_069 NA | |
| IL_6YDP_076 | 1/BA/880:883, 1/BA/898:899 | Minor groove platform, major groove intercalation | geometric IL_5J7L_314 NA | |
| IL_6YDP_077 | 1/BA/884:885, 1/BA/894:897 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.2 | |
| IL_6YDP_078 | 1/BA/928:929, 1/BA/959:962 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_6YDP_079 | 1/BA/929:940, 1/BA/956:959 | No text annotation | ||
| IL_6YDP_080 | 1/BA/1045:1047, 1/BA/1440:1441 | Major groove platform | geometric IL_5J7L_320 NA | |
| IL_6YDP_081 | 1/BA/1049:1051, 1/BA/1435:1438 | No text annotation | geometric IL_4WF9_079 IL_80025.1 | |
| IL_6YDP_082 | 1/BA/1062:1064, 1/BA/1265:1266 | Single bulged U | geometric IL_7RQB_080 NA | |
| IL_6YDP_083 | 1/BA/1065:1066, 1/BA/1261:1264 | Minor groove platform | geometric IL_5TBW_094 NA | |
| IL_6YDP_084 | 1/BA/1075:1078, 1/BA/1138:1140 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_6YDP_085 | 1/BA/1080:1082, 1/BA/1134:1136 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_6YDP_086 | 1/BA/1085:1087, 1/BA/1126:1131 | No text annotation | ||
| IL_6YDP_110 | 1/BA/1186:1191, 1/BA/1212:1222 | No text annotation | ||
| IL_6YDP_088 | 1/BA/1192:1194, 1/BA/1208:1211 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_6YDP_111 | 1/BA/1192:1196, 1/BA/1207:1211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_6YDP_089 | 1/BA/1194:1196, 1/BA/1207:1208 | Minor groove platform | geometric IL_4LFB_004 IL_34520.3 | |
| IL_6YDP_090 | 1/BA/1276:1277, 1/BA/1321:1323 | Single stack bend | geometric IL_4WF9_089 IL_15011.2 | |
| IL_6YDP_091 | 1/BA/1277:1278, 1/BA/1319:1321 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_6YDP_092 | 1/BA/1279:1282, 1/BA/1316:1318 | No text annotation | geometric IL_6DME_003 IL_75527.2 | |
| IL_6YDP_093 | 1/BA/1282:1284, 1/BA/1312:1316 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.2 | |
| IL_6YDP_094 | 1/BA/1289:1293, 1/BA/1303:1307 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_6YDP_095 | 1/BA/1330:1331, 1/BA/1403:1405 | Major groove platform | geometric IL_7RQB_096 NA | |
| IL_6YDP_096 | 1/BA/1333:1335, 1/BA/1397:1401 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_68118.3 | |
| IL_6YDP_097 | 1/BA/1335:1336, 1/BA/1394:1397 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_6YDP_098 | 1/BA/1344:1346, 1/BA/1363:1367 | No text annotation | ||
| IL_6YDP_099 | 1/BA/1414:1415, 1/BA/1424:1426 | Single bulged A | geometric IL_1U9S_001 IL_14190.2 | |
| IL_6YDP_100 | 1/BA/1454:1461, 1/BA/1466:1472 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_6YDP_101 | 1/BA/1483:1487, 1/BA/1497:1499 | C-loop | geometric IL_4JRC_003 IL_63596.12 | |
| IL_6YDP_102 | 1/BA/1487:1489, 1/BA/1495:1497 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.3 | |
| IL_6YDP_103 | 1/BA/1507:1512, 1/BA/1534:1539 | No text annotation | geometric IL_4QLM_002 IL_74322.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6YDP_042 | No text annotation | ||
| IL_6YDP_043 | No text annotation | ||
| IL_6YDP_109 | No text annotation | ||
| IL_6YDP_087 | Single stack bend | ||
| IL_6YDP_112 | No text annotation | ||
| IL_6YDP_113 | Partly complementary | ||
| IL_6YDP_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6YDP_001 | 1/AA/31:34, 1/AA/222:226, 1/AA/271:274 | No text annotation | ||
| J3_6YDP_002 | 1/AA/41:44, 1/AA/179:186, 1/AA/212:214 | No text annotation | ||
| J3_6YDP_003 | 1/AA/326:327, 1/AA/367:373, 1/AA/383:384 | No text annotation | ||
| J3_6YDP_015 | 1/AA/542:545, 1/AA/788:794, 1/AA/816:823 | No text annotation | homologous J3_5J7L_052 NA | |
| J3_6YDP_004 | 1/AA/549:552, 1/AA/719:721, 1/AA/781:784 | No text annotation | geometric J3_4LFB_003 J3_44359.1 | |
| J3_6YDP_005 | 1/AA/561:567, 1/AA/578:589, 1/AA/706:709 | No text annotation | ||
| J3_6YDP_006 | 1/AA/595:598, 1/AA/605:607, 1/AA/695:700 | No text annotation | geometric J3_5J7L_007 NA | |
| J3_6YDP_007 | 1/AA/623:628, 1/AA/656:663, 1/AA/671:678 | No text annotation | ||
| J3_6YDP_008 | 1/AA/721:725, 1/AA/737:749, 1/AA/778:781 | No text annotation | ||
| J3_6YDP_016 | 1/BA/8:11, 1/BA/106:120, 1/BA/127:132 | No text annotation | ||
| J3_6YDP_017 | 1/BA/14:54, 1/BA/61:70, 1/BA/95:102 | No text annotation | ||
| J3_6YDP_009 | 1/BA/251:257, 1/BA/320:322, 1/BA/338:341 | No text annotation | geometric J3_5J7L_038 NA | |
| J3_6YDP_010 | 1/BA/266:268, 1/BA/279:283, 1/BA/307:310 | No text annotation | geometric J3_8VTW_002 NA | |
| J3_6YDP_018 | 1/BA/482:504, 1/BA/524:531, 1/BA/546:586 | No text annotation | ||
| J3_6YDP_011 | 1/BA/669:676, 1/BA/755:759, 1/BA/768:770 | No text annotation | ||
| J3_6YDP_012 | 1/BA/676:678, 1/BA/701:708, 1/BA/753:755 | No text annotation | ||
| J3_6YDP_019 | 1/BA/1182:1183, 1/BA/1225:1236, 1/BA/1245:1251 | No text annotation | ||
| J3_6YDP_013 | 1/BA/1186:1187, 1/BA/1190:1191, 1/BA/1212:1222 | No text annotation | ||
| J3_6YDP_014 | 1/BA/1340:1343, 1/BA/1368:1370, 1/BA/1384:1390 | No text annotation | geometric J3_8VTW_008 NA | |
| J4_6YDP_001 | 1/AA/52:55, 1/AA/62:69, 1/AA/156:158, 1/AA/167:173 | No text annotation | ||
| J4_6YDP_002 | 1/AA/71:77, 1/AA/106:108, 1/AA/144:147, 1/AA/153:154 | No text annotation | ||
| J4_6YDP_003 | 1/AA/296:298, 1/AA/404:409, 1/AA/450:461, 1/AA/483:484 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_6YDP_004 | 1/AV/7:10, 1/AV/22:24, 1/AV/40:48, 1/AV/57:61 | No text annotation | ||
| J4_6YDP_005 | 1/BA/648:651, 1/BA/660:661, 1/BA/781:784, 1/BA/1003:1005 | No text annotation | ||
| J4_6YDP_006 | 1/BA/669:678, 1/BA/701:708, 1/BA/753:759, 1/BA/768:770 | No text annotation | ||
| J4_6YDP_007 | 1/BA/824:828, 1/BA/840:845, 1/BA/869:874, 1/BA/969:974 | No text annotation | ||
| J4_6YDP_008 | 1/BA/876:878, 1/BA/901:902, 1/BA/919:928, 1/BA/962:967 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6YDP_009 | 1/BA/1446:1448, 1/BA/1478:1479, 1/BA/1503:1505, 1/BA/1541:1543 | No text annotation | ||
| J4_6YDP_010 | 1/BB/7:10, 1/BB/26:28, 1/BB/44:49, 1/BB/62:63 | tRNA junction | homologous J4_7UQ6_001 J4_95067.1 | |
| J5_6YDP_001 | 1/BA/201:210, 1/BA/236:239, 1/BA/356:359, 1/BA/605:609, 1/BA/624:634 | No text annotation | ||
| J5_6YDP_002 | 1/BA/1052:1059, 1/BA/1269:1276, 1/BA/1323:1330, 1/BA/1405:1411, 1/BA/1429:1434 | No text annotation | ||
| J5_6YDP_003 | 1/BA/1069:1072, 1/BA/1143:1146, 1/BA/1158:1159, 1/BA/1181:1182, 1/BA/1251:1258 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_6YDP_001 | 1/BA/363:369, 1/BA/380:384, 1/BA/427:434, 1/BA/457:461, 1/BA/470:475, 1/BA/592:601 | No text annotation | ||
| J6_6YDP_002 | 1/BA/1069:1072, 1/BA/1143:1146, 1/BA/1158:1159, 1/BA/1181:1183, 1/BA/1225:1236, 1/BA/1245:1258 | No text annotation |
Problematic loops
No problematic loops
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