HL_6YDP_013

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAACUG

Length

6 nucleotides

Bulged bases

6YDP|1|AA|A|502, 6YDP|1|AA|C|504, 6YDP|1|AA|U|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_013 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.2326

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6YDP|1|AA|C|501
6YDP|1|AA|A|502
6YDP|1|AA|A|503
6YDP|1|AA|C|504
6YDP|1|AA|U|505
6YDP|1|AA|G|506

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

uS15m

Chain An

Aurora kinase A interacting protein 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA