HL_6YDP_014
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUAAACCCC
- Length
- 10 nucleotides
- Bulged bases
- 6YDP|1|AA|C|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_014 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.185
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
6YDP|1|AA|G|568
6YDP|1|AA|A|569
6YDP|1|AA|U|570
6YDP|1|AA|A|571
6YDP|1|AA|A|572
6YDP|1|AA|A|573
6YDP|1|AA|C|574
6YDP|1|AA|C|575
6YDP|1|AA|C|576
6YDP|1|AA|C|577
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AI
- uS9m
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AV
- fMet-tRNAMet (P site)
- Chain BC
- Elongation factor G, mitochondrial
Coloring options: