HL_6YDP_016

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAAAA

Length

6 nucleotides

Bulged bases

6YDP|1|AA|A|637, 6YDP|1|AA|A|640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_016 not in the Motif Atlas

Geometric match to HL_5TBW_040

Geometric discrepancy: 0.0958

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6YDP|1|AA|U|636
6YDP|1|AA|A|637
6YDP|1|AA|A|638
6YDP|1|AA|A|639
6YDP|1|AA|A|640
6YDP|1|AA|A|641

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AB

Mitochondrial ribosomal protein S2

Chain AE

Mitochondrial ribosomal protein S5

Chain AF

bS6m

Chain Ab

mS23

Chain Am

mS37