HL_6YDP_023

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAAUAA

Length

7 nucleotides

Bulged bases

6YDP|1|AV|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_023 not in the Motif Atlas

Geometric match to HL_2AZX_004

Geometric discrepancy: 0.2317

The information below is about HL_2AZX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6YDP|1|AV|U|13
6YDP|1|AV|A|14
6YDP|1|AV|A|15
6YDP|1|AV|A|16
6YDP|1|AV|U|17
6YDP|1|AV|A|18
6YDP|1|AV|A|19

Current chains

Chain AV

fMet-tRNAMet (P site)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA