HL_6YDP_028
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_028 not in the Motif Atlas
- Geometric match to HL_4QK9_002
- Geometric discrepancy: 0.0891
- The information below is about HL_4QK9_002
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
6YDP|1|BA|C|121
6YDP|1|BA|G|122
6YDP|1|BA|U|123
6YDP|1|BA|A|124
6YDP|1|BA|A|125
6YDP|1|BA|G|126
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BX
- uL23m
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bi
- Mitochondrial ribosomal protein L45
Coloring options: