HL_6YDP_030
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6YDP|1|BA|A|191
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDP_030 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.1282
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6YDP|1|BA|U|183
6YDP|1|BA|U|184
6YDP|1|BA|U|185
6YDP|1|BA|U|186
6YDP|1|BA|G|187
6YDP|1|BA|C|188
6YDP|1|BA|A|189
6YDP|1|BA|U|190
6YDP|1|BA|A|191
6YDP|1|BA|A|192
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B5
- bL32m
- Chain BE
- ICT1
- Chain BP
- uL15m
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bt
- Mitochondrial ribosomal protein L57
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