HL_6YDP_031

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGAAC

Length

6 nucleotides

Bulged bases

6YDP|1|BA|G|222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_031 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.1911

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6YDP|1|BA|G|220
6YDP|1|BA|A|221
6YDP|1|BA|G|222
6YDP|1|BA|A|223
6YDP|1|BA|A|224
6YDP|1|BA|C|225

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B8

Mitochondrial ribosomal protein L35

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bl

Mrpl34

Chain Bn

Mitochondrial ribosomal protein L51

Chain Bv

mL64