HL_6YDP_040

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_040 not in the Motif Atlas

Geometric match to HL_1MMS_002

Geometric discrepancy: 0.1524

The information below is about HL_1MMS_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YDP|1|BA|C|536
6YDP|1|BA|G|537
6YDP|1|BA|U|538
6YDP|1|BA|U|539
6YDP|1|BA|A|540
6YDP|1|BA|A|541
6YDP|1|BA|A|542
6YDP|1|BA|G|543

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BC

Elongation factor G, mitochondrial

Chain BK

Mitochondrial ribosomal protein L11

Chain Bq

mL54