HL_6YDP_049

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAUUCUGAC

Length

10 nucleotides

Bulged bases

6YDP|1|BA|U|909, 6YDP|1|BA|U|910

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|G|906
6YDP|1|BA|U|907
6YDP|1|BA|A|908
6YDP|1|BA|U|909
6YDP|1|BA|U|910
6YDP|1|BA|C|911
6YDP|1|BA|U|912
6YDP|1|BA|G|913
6YDP|1|BA|A|914
6YDP|1|BA|C|915

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

fMet-tRNAMet (P site)

Chain BC

Elongation factor G, mitochondrial