HL_6YDP_052

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUGGGGUGA

Length

9 nucleotides

Bulged bases

6YDP|1|BA|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_052 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1213

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6YDP|1|BA|U|1148
6YDP|1|BA|U|1149
6YDP|1|BA|G|1150
6YDP|1|BA|G|1151
6YDP|1|BA|G|1152
6YDP|1|BA|G|1153
6YDP|1|BA|U|1154
6YDP|1|BA|G|1155
6YDP|1|BA|A|1156

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AV

fMet-tRNAMet (P site)

Chain B0

Mitochondrial ribosomal protein L27

Chain BQ

uL16m