HL_6YDP_053

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUACAAAAAACCC

Length

13 nucleotides

Bulged bases

6YDP|1|BA|C|1167, 6YDP|1|BA|A|1168, 6YDP|1|BA|C|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|G|1164
6YDP|1|BA|U|1165
6YDP|1|BA|A|1166
6YDP|1|BA|C|1167
6YDP|1|BA|A|1168
6YDP|1|BA|A|1169
6YDP|1|BA|A|1170
6YDP|1|BA|A|1171
6YDP|1|BA|A|1172
6YDP|1|BA|A|1173
6YDP|1|BA|C|1174
6YDP|1|BA|C|1175
6YDP|1|BA|C|1176

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain B3

uL30m

Chain BQ

uL16m

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bk

39S ribosomal protein L48, mitochondrial