HL_6YDP_064

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAGAACAG

Length

9 nucleotides

Bulged bases

6YDP|1|BA|U|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDP_064 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.129

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6YDP|1|BA|C|1557
6YDP|1|BA|U|1558
6YDP|1|BA|A|1559
6YDP|1|BA|G|1560
6YDP|1|BA|A|1561
6YDP|1|BA|A|1562
6YDP|1|BA|C|1563
6YDP|1|BA|A|1564
6YDP|1|BA|G|1565

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

bL32m

Chain BE

ICT1

Chain BR

Uncharacterized protein

Chain BT

Mitochondrial ribosomal protein L19