HL_6YDW_002

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAUCCG

Length

6 nucleotides

Bulged bases

6YDW|1|AA|U|58, 6YDW|1|AA|C|59

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_002 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.355

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YDW|1|AA|U|56
6YDW|1|AA|A|57
6YDW|1|AA|U|58
6YDW|1|AA|C|59
6YDW|1|AA|C|60
6YDW|1|AA|G|61

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ad

Mitochondrial ribosomal protein S26

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

mS34

Chain Ap

28S ribosomal protein S18b, mitochondrial