HL_6YDW_005

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6YDW|1|AA|U|149, 6YDW|1|AA|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_005 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.2781

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6YDW|1|AA|G|147
6YDW|1|AA|C|148
6YDW|1|AA|U|149
6YDW|1|AA|C|150
6YDW|1|AA|A|151
6YDW|1|AA|A|152
6YDW|1|AA|C|153

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AP

28S ribosomal protein S16, mitochondrial

Chain Ac

Mitochondrial ribosomal protein S25