HL_6YDW_008

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_008 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.2803

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6YDW|1|AA|C|248
6YDW|1|AA|C|249
6YDW|1|AA|A|250
6YDW|1|AA|C|251
6YDW|1|AA|C|252
6YDW|1|AA|G|253

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain Ap

28S ribosomal protein S18b, mitochondrial