HL_6YDW_009
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUGUAAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 6YDW|1|AA|U|345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_009 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.2404
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6YDW|1|AA|C|342
6YDW|1|AA|U|343
6YDW|1|AA|G|344
6YDW|1|AA|U|345
6YDW|1|AA|A|346
6YDW|1|AA|A|347
6YDW|1|AA|A|348
6YDW|1|AA|A|349
6YDW|1|AA|A|350
6YDW|1|AA|G|351
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AK
- uS11m
- Chain AU
- bS21m
- Chain AX
- mRNA
- Chain AY
- tRNAMet
Coloring options: