HL_6YDW_016

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAAAAA

Length

6 nucleotides

Bulged bases

6YDW|1|AA|A|637, 6YDW|1|AA|A|640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_016 not in the Motif Atlas

Geometric match to HL_5J7L_204

Geometric discrepancy: 0.1303

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YDW|1|AA|U|636
6YDW|1|AA|A|637
6YDW|1|AA|A|638
6YDW|1|AA|A|639
6YDW|1|AA|A|640
6YDW|1|AA|A|641

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AB

Mitochondrial ribosomal protein S2

Chain AE

Mitochondrial ribosomal protein S5

Chain AF

Uncharacterized protein

Chain Ab

mS23

Chain Am

mS37