HL_6YDW_017

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAGCACA

Length

7 nucleotides

Bulged bases

6YDW|1|AA|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_017 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.1794

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YDW|1|AA|U|664
6YDW|1|AA|A|665
6YDW|1|AA|G|666
6YDW|1|AA|C|667
6YDW|1|AA|A|668
6YDW|1|AA|C|669
6YDW|1|AA|A|670

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

Uncharacterized protein

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14