HL_6YDW_033
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUUGCAUAA
- Length
- 10 nucleotides
- Bulged bases
- 6YDW|1|BA|U|185, 6YDW|1|BA|A|191
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_033 not in the Motif Atlas
- Geometric match to HL_4FRN_005
- Geometric discrepancy: 0.1649
- The information below is about HL_4FRN_005
- Detailed Annotation
- T-loop with 2 bulged bases not stacked
- Broad Annotation
- T-loop
- Motif group
- HL_01609.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
6YDW|1|BA|U|183
6YDW|1|BA|U|184
6YDW|1|BA|U|185
6YDW|1|BA|U|186
6YDW|1|BA|G|187
6YDW|1|BA|C|188
6YDW|1|BA|A|189
6YDW|1|BA|U|190
6YDW|1|BA|A|191
6YDW|1|BA|A|192
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B5
- Uncharacterized protein
- Chain BE
- ICT1
- Chain BP
- Uncharacterized protein
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bt
- Mitochondrial ribosomal protein L57
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