HL_6YDW_034

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAGAAC

Length

6 nucleotides

Bulged bases

6YDW|1|BA|G|222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_034 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1965

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YDW|1|BA|G|220
6YDW|1|BA|A|221
6YDW|1|BA|G|222
6YDW|1|BA|A|223
6YDW|1|BA|A|224
6YDW|1|BA|C|225

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B8

Mitochondrial ribosomal protein L35

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

Uncharacterized protein

Chain Bl

Mrpl34

Chain Bn

Mitochondrial ribosomal protein L51

Chain Bv

Uncharacterized protein