HL_6YDW_035

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

6YDW|1|BA|A|274, 6YDW|1|BA|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_035 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3077

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YDW|1|BA|U|269
6YDW|1|BA|U|270
6YDW|1|BA|U|271
6YDW|1|BA|A|272
6YDW|1|BA|A|273
6YDW|1|BA|A|274
6YDW|1|BA|A|275
6YDW|1|BA|G|276
6YDW|1|BA|A|277
6YDW|1|BA|A|278

Current chains

Chain BA

12S rRNA

Nearby chains

Chain An

Aurora kinase A interacting protein 1

Chain BD

Uncharacterized protein

Chain Ba

Mitochondrial ribosomal protein L37