HL_6YDW_038

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUUAG

Length

6 nucleotides

Bulged bases

6YDW|1|BA|U|373, 6YDW|1|BA|A|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_038 not in the Motif Atlas

Geometric match to HL_7RQB_025

Geometric discrepancy: 0.1762

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6YDW|1|BA|U|372
6YDW|1|BA|U|373
6YDW|1|BA|U|374
6YDW|1|BA|U|375
6YDW|1|BA|A|376
6YDW|1|BA|G|377

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B0

Mitochondrial ribosomal protein L27

Chain BP

Uncharacterized protein