HL_6YDW_045

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGCCUU

Length

6 nucleotides

Bulged bases

6YDW|1|BA|C|655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_045 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3217

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6YDW|1|BA|A|653
6YDW|1|BA|G|654
6YDW|1|BA|C|655
6YDW|1|BA|C|656
6YDW|1|BA|U|657
6YDW|1|BA|U|658

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

Uncharacterized protein

Chain BR

Uncharacterized protein

Chain Bw

39S ribosomal protein S30, mitochondrial