HL_6YDW_053

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCCAAAUAA

Length

9 nucleotides

Bulged bases

6YDW|1|BA|U|950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_053 not in the Motif Atlas

Geometric match to HL_5TBW_050

Geometric discrepancy: 0.255

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6YDW|1|BA|U|944
6YDW|1|BA|C|945
6YDW|1|BA|C|946
6YDW|1|BA|A|947
6YDW|1|BA|A|948
6YDW|1|BA|A|949
6YDW|1|BA|U|950
6YDW|1|BA|A|951
6YDW|1|BA|A|952

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

Uncharacterized protein