HL_6YEF_002
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUGUAAGUAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_002 not in the Motif Atlas
- Homologous match to HL_7A0S_002
- Geometric discrepancy: 0.3382
- The information below is about HL_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6YEF|1|A|C|86
6YEF|1|A|U|87
6YEF|1|A|G|88
6YEF|1|A|U|89
6YEF|1|A|A|90
6YEF|1|A|A|91
6YEF|1|A|G|92
6YEF|1|A|U|93
6YEF|1|A|A|94
6YEF|1|A|A|95
6YEF|1|A|G|96
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain W
- 50S ribosomal protein L23
- Chain X
- 50S ribosomal protein L24
Coloring options: