HL_6YEF_007

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

6YEF|1|A|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_007 not in the Motif Atlas

Homologous match to HL_4WF9_007

Geometric discrepancy: 0.2063

The information below is about HL_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6YEF|1|A|A|228
6YEF|1|A|A|229
6YEF|1|A|A|230
6YEF|1|A|A|231
6YEF|1|A|U|232
6YEF|1|A|U|233

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15