HL_6YEF_013

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

6YEF|1|A|G|432, 6YEF|1|A|A|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1812

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YEF|1|A|A|427
6YEF|1|A|G|428
6YEF|1|A|C|429
6YEF|1|A|A|430
6YEF|1|A|C|431
6YEF|1|A|G|432
6YEF|1|A|U|433
6YEF|1|A|G|434
6YEF|1|A|A|435
6YEF|1|A|A|436
6YEF|1|A|A|437
6YEF|1|A|U|438
6YEF|1|A|U|439

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28