HL_6YEF_023

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

6YEF|1|A|U|792, 6YEF|1|A|A|796, 6YEF|1|A|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_023 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1038

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|C|789
6YEF|1|A|G|790
6YEF|1|A|U|791
6YEF|1|A|U|792
6YEF|1|A|G|793
6YEF|1|A|A|794
6YEF|1|A|A|795
6YEF|1|A|A|796
6YEF|1|A|A|797
6YEF|1|A|G|798

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain 6

50S ribosomal protein L34

Chain E

50S ribosomal protein L3

Chain V

50S ribosomal protein L22