HL_6YEF_027

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

6YEF|1|A|U|1002, 6YEF|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0943

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6YEF|1|A|U|999
6YEF|1|A|G|1000
6YEF|1|A|A|1001
6YEF|1|A|U|1002
6YEF|1|A|A|1003
6YEF|1|A|A|1004
6YEF|1|A|G|1005
6YEF|1|A|G|1006

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16