HL_6YEF_047

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6YEF|1|A|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0975

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6YEF|1|A|G|1976
6YEF|1|A|G|1977
6YEF|1|A|U|1978
6YEF|1|A|A|1979
6YEF|1|A|A|1980
6YEF|1|A|G|1981
6YEF|1|A|U|1982
6YEF|1|A|U|1983
6YEF|1|A|C|1984

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA