HL_6YEF_064

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6YEF|1|A|G|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1014

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|C|2772
6YEF|1|A|U|2773
6YEF|1|A|G|2774
6YEF|1|A|A|2775
6YEF|1|A|A|2776
6YEF|1|A|A|2777
6YEF|1|A|G|2778
6YEF|1|A|C|2779
6YEF|1|A|A|2780
6YEF|1|A|U|2781
6YEF|1|A|C|2782
6YEF|1|A|U|2783
6YEF|1|A|A|2784
6YEF|1|A|A|2785
6YEF|1|A|G|2786

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L13