HL_6YEF_069

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUACG

Length

6 nucleotides

Bulged bases

6YEF|1|B|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_069 not in the Motif Atlas

Geometric match to HL_7RQB_007

Geometric discrepancy: 0.2705

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6YEF|1|B|C|83
6YEF|1|B|U|84
6YEF|1|B|U|85
6YEF|1|B|A|86
6YEF|1|B|C|87
6YEF|1|B|G|88

Current chains

Chain B

5S rRNA

Nearby chains

Chain 2

50S ribosomal protein L30

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16