HL_6YEF_077

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1193

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6YEF|1|a|A|328
6YEF|1|a|A|329
6YEF|1|a|C|330
6YEF|1|a|U|331
6YEF|1|a|G|332
6YEF|1|a|A|333
6YEF|1|a|G|334
6YEF|1|a|A|335
6YEF|1|a|C|336
6YEF|1|a|A|337
6YEF|1|a|C|338
6YEF|1|a|G|339
6YEF|1|a|G|340
6YEF|1|a|U|341

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20