HL_6YEF_084
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_084 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0963
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6YEF|1|a|C|697
6YEF|1|a|G|698
6YEF|1|a|G|699
6YEF|1|a|U|700
6YEF|1|a|G|701
6YEF|1|a|A|702
6YEF|1|a|A|703
6YEF|1|a|A|704
6YEF|1|a|U|705
6YEF|1|a|G|706
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain v
- mRNA
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