HL_6YEF_092

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6YEF|1|a|U|1040, 6YEF|1|a|C|1041, 6YEF|1|a|G|1042

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_092 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3944

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YEF|1|a|C|1038
6YEF|1|a|U|1039
6YEF|1|a|U|1040
6YEF|1|a|C|1041
6YEF|1|a|G|1042
6YEF|1|a|G|1043

Current chains

Chain a

16S rRNA

Nearby chains