HL_6YEF_094

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6YEF|1|a|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_094 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1133

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6YEF|1|a|G|1100
6YEF|1|a|U|1101
6YEF|1|a|U|1102
6YEF|1|a|A|1103
6YEF|1|a|A|1104
6YEF|1|a|G|1105
6YEF|1|a|U|1106
6YEF|1|a|C|1107

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2