HL_6YEF_102
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 6YEF|1|x|C|16, 6YEF|1|x|G|18, 6YEF|1|x|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_102 not in the Motif Atlas
- Homologous match to HL_4TUE_033
- Geometric discrepancy: 0.1585
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6YEF|1|x|C|13
6YEF|1|x|A|14
6YEF|1|x|G|15
6YEF|1|x|C|16
6YEF|1|x|C|17
6YEF|1|x|U|17|||A
6YEF|1|x|G|18
6YEF|1|x|G|19
6YEF|1|x|H2U|20
6YEF|1|x|A|21
6YEF|1|x|G|22
Current chains
- Chain x
- E-site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L5
Coloring options: