HL_6YEF_109

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACUAUAA(OMC)

Length

11 nucleotides

Bulged bases

6YEF|1|A|A|1940

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_109 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.2112

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6YEF|1|A|G|1937
6YEF|1|A|U|1938
6YEF|1|A|A|1939
6YEF|1|A|A|1940
6YEF|1|A|C|1941
6YEF|1|A|U|1942
6YEF|1|A|A|1943
6YEF|1|A|U|1944
6YEF|1|A|A|1945
6YEF|1|A|A|1946
6YEF|1|A|OMC|1947

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Transfer RNA; tRNA