HL_6YHS_011

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAUAUUC

Length

9 nucleotides

Bulged bases

6YHS|1|1|G|324, 6YHS|1|1|A|325, 6YHS|1|1|U|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1061

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6YHS|1|1|G|322
6YHS|1|1|U|323
6YHS|1|1|G|324
6YHS|1|1|A|325
6YHS|1|1|U|326
6YHS|1|1|A|327
6YHS|1|1|U|328
6YHS|1|1|U|329
6YHS|1|1|C|330

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain Q

50S ribosomal protein L24