HL_6YHS_013

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6YHS|1|1|G|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0814

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6YHS|1|1|G|402
6YHS|1|1|G|403
6YHS|1|1|A|404
6YHS|1|1|C|405
6YHS|1|1|C|406
6YHS|1|1|A|407
6YHS|1|1|U|408
6YHS|1|1|C|409

Current chains

Chain 1

23S ribosomal RNA

Nearby chains