HL_6YHS_022
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 6YHS|1|1|U|738, 6YHS|1|1|A|742, 6YHS|1|1|A|743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YHS_022 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1183
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YHS|1|1|C|735
6YHS|1|1|G|736
6YHS|1|1|U|737
6YHS|1|1|U|738
6YHS|1|1|G|739
6YHS|1|1|A|740
6YHS|1|1|A|741
6YHS|1|1|A|742
6YHS|1|1|A|743
6YHS|1|1|G|744
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
- Chain Z
- 50S ribosomal protein L34
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