HL_6YHS_046

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6YHS|1|1|A|1902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_046 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2168

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6YHS|1|1|G|1899
6YHS|1|1|U|1900
6YHS|1|1|A|1901
6YHS|1|1|A|1902
6YHS|1|1|C|1903
6YHS|1|1|U|1904
6YHS|1|1|A|1905
6YHS|1|1|U|1906
6YHS|1|1|A|1907
6YHS|1|1|A|1908
6YHS|1|1|C|1909

Current chains

Chain 1

23S ribosomal RNA

Nearby chains