HL_6YHS_050

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAUCC

Length

7 nucleotides

Bulged bases

6YHS|1|1|G|2200, 6YHS|1|1|U|2202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_050 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.103

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6YHS|1|1|G|2198
6YHS|1|1|U|2199
6YHS|1|1|G|2200
6YHS|1|1|A|2201
6YHS|1|1|U|2202
6YHS|1|1|C|2203
6YHS|1|1|C|2204

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2