HL_6YHS_052
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6YHS|1|1|A|2257, 6YHS|1|1|C|2264
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YHS_052 not in the Motif Atlas
- Homologous match to HL_5J7L_187
- Geometric discrepancy: 0.0663
- The information below is about HL_5J7L_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91939.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6YHS|1|1|C|2253
6YHS|1|1|U|2254
6YHS|1|1|A|2255
6YHS|1|1|A|2256
6YHS|1|1|A|2257
6YHS|1|1|G|2258
6YHS|1|1|A|2259
6YHS|1|1|G|2260
6YHS|1|1|U|2261
6YHS|1|1|A|2262
6YHS|1|1|A|2263
6YHS|1|1|C|2264
6YHS|1|1|G|2265
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L27
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