HL_6YHS_055

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_055 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1348

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6YHS|1|1|C|2344
6YHS|1|1|C|2345
6YHS|1|1|C|2346
6YHS|1|1|A|2347
6YHS|1|1|C|2348
6YHS|1|1|A|2349
6YHS|1|1|A|2350
6YHS|1|1|G|2351

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L15

Chain S

50S ribosomal protein L27

Chain a

50S ribosomal protein L35