HL_6YHS_059

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGCAG

Length

8 nucleotides

Bulged bases

6YHS|1|1|G|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YHS_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0997

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6YHS|1|1|U|2517
6YHS|1|1|G|2518
6YHS|1|1|A|2519
6YHS|1|1|A|2520
6YHS|1|1|G|2521
6YHS|1|1|C|2522
6YHS|1|1|A|2523
6YHS|1|1|G|2524

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain b

50S ribosomal protein L36