HL_6YLG_004

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6YLG|1|1|U|133, 6YLG|1|1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0829

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6YLG|1|1|C|132
6YLG|1|1|U|133
6YLG|1|1|U|134
6YLG|1|1|C|135
6YLG|1|1|G|136

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A