HL_6YLG_008

3D structure

PDB id

6YLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

6YLG|1|1|A|284, 6YLG|1|1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YLG_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1004

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6YLG|1|1|U|278
6YLG|1|1|U|279
6YLG|1|1|U|280
6YLG|1|1|G|281
6YLG|1|1|G|282
6YLG|1|1|G|283
6YLG|1|1|A|284
6YLG|1|1|A|285
6YLG|1|1|U|286
6YLG|1|1|G|287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L28