HL_6YLG_055
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAGGG
- Length
- 7 nucleotides
- Bulged bases
- 6YLG|1|1|A|2694, 6YLG|1|1|A|2696, 6YLG|1|1|A|2697
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YLG_055 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.2771
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6YLG|1|1|C|2693
6YLG|1|1|A|2694
6YLG|1|1|A|2696
6YLG|1|1|A|2697
6YLG|1|1|G|2698
6YLG|1|1|G|2699
6YLG|1|1|G|2700
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 5
- rRNA-processing protein CGR1
- Chain D
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21-A
- Chain t
- Protein SDA1
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